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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: hESC derived neural cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2403342
NR H3K27ac ChIP rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
isolate
cell line
age
not applicable
biomaterial_provider
not applicable
sex
female
tissue
not applicable
cell_line
H9 (WA09)
cell_type
neural stem cells
Sequenced DNA Library
library_name
H3K27ac_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 550
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21162962
Reads aligned (%)
95.1
Duplicates removed (%)
2.7
Number of peaks
2375 (qval < 1E-05)
hg19
Number of total reads
21162962
Reads aligned (%)
94.5
Duplicates removed (%)
4.1
Number of peaks
2413 (qval < 1E-05)
Base call quality data from
DBCLS SRA