SRX2403338
NR ChIP Input rep3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

isolate
cell line
age
not applicable
biomaterial_provider
not applicable
sex
female
tissue
not applicable
cell_line
H9 (WA09)
cell_type
neural stem cells

Sequenced DNA Library

library_name
Input_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20765900
Reads aligned (%)
95.9
Duplicates removed (%)
9.6
Number of peaks
1802 (qval < 1E-05)

hg19

Number of total reads
20765900
Reads aligned (%)
94.5
Duplicates removed (%)
14.0
Number of peaks
822 (qval < 1E-05)

Base call quality data from DBCLS SRA