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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2390425
ChIP-seq of human embryonic stem cells: Input rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
isolate
embryo
age
n/a
biomaterial_provider
Dr. Carol B Ware; UW Medicine Research 850 Republican Street, Box 358056, Seattle, WA 98109
sex
male
tissue
embryo
cell_line
H1
cell_type
embryonic stem cell
dev_stage
naive
growth condition
2i + JNKi + p38i (4i), Lif, IGF1, FGF
Sequenced DNA Library
library_name
H1 4iLIF Input rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
11533648
Reads aligned (%)
84.5
Duplicates removed (%)
2.2
Number of peaks
540 (qval < 1E-05)
hg19
Number of total reads
11533648
Reads aligned (%)
83.9
Duplicates removed (%)
3.5
Number of peaks
580 (qval < 1E-05)
Base call quality data from
DBCLS SRA