SRX2390416
ChIP-seq of human embryonic stem cells: Input rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

isolate
embryo
age
n/a
biomaterial_provider
Dr. Carol B Ware; UW Medicine Research 850 Republican Street, Box 358056, Seattle, WA 98109
sex
male
tissue
embryo
cell_line
H1
cell_type
embryonic stem cell
dev_stage
naive
growth condition
2i + JNKi + p38i (4i), Lif, IGF1, FGF

Sequenced DNA Library

library_name
H1 4iLIF Input rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10955182
Reads aligned (%)
85.9
Duplicates removed (%)
2.3
Number of peaks
539 (qval < 1E-05)

hg19

Number of total reads
10955182
Reads aligned (%)
85.2
Duplicates removed (%)
3.5
Number of peaks
557 (qval < 1E-05)

Base call quality data from DBCLS SRA