SRX2389668
GSM2412752: DNA methylation in NT cells Replicate 2; Homo sapiens; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Lung
Cell type
Lung epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
Lung Epithelial
cell type
non-treated lung epithelial cells

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Genomic DNA was extracted using Qiagen Dneasykit according to manusfacturers instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43978652
Reads aligned (%)
42.8
Coverage rate (×)
0.9
Number of hyper MRs
202804 (qval < 1E-05)

hg19

Number of total reads
43978652
Reads aligned (%)
43.6
Coverage rate (×)
1.0
Number of hyper MRs
207026 (qval < 1E-05)

Base call quality data from DBCLS SRA