Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Jurkat

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Acute Lymphocytic

Sample

source_name

Jurkat T cells

jurkat clone

A3

genotype

WT

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Nuclei were extracted from 50,000 cells using Nuclei EZ Lysis Buffer (Sigma-Aldrich). ATAC libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

90058793

Reads aligned (%)

79.1

Duplicates removed (%)

31.6

Number of peaks

41776 (qval < 1E-05)

hg19

Number of total reads

90058793

Reads aligned (%)

78.8

Duplicates removed (%)

31.8

Number of peaks

42058 (qval < 1E-05)