Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pluripotent stem cell

Cell type

ES cells

NA

NA

Sample

source_name

Naïve human embryonic stem cells

developmental stage

naive

cell type

embryonic stem cell

growth condition

GSKi + MEKi (2i), Lif, IGF1, FGF

chip antibody

n/a

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq as outlined in Hawkins et al., 2013; DNase-HiC similar to Deng et al., 2015

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

31149021

Reads aligned (%)

81.1

Duplicates removed (%)

4.2

Number of peaks

1243 (qval < 1E-05)

hg19

Number of total reads

31149021

Reads aligned (%)

80.2

Duplicates removed (%)

6.2

Number of peaks

1310 (qval < 1E-05)