Antigen

Antigen Class

TFs and others

Antigen

Hnf4a

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

liver

strain

C57B/6

tissue

liver

age

10 weeks old

gender

male

antibody

HNF4A

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Livers were isolated, flash frozen on liquid nitrogen, and later processed for RNA extraction with Trizol, or fixed with 1% formaldehyde for ChIP. Libraries were prepared using standard Illumnia protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

30438633

Reads aligned (%)

91.5

Duplicates removed (%)

49.4

Number of peaks

698 (qval < 1E-05)

mm9

Number of total reads

30438633

Reads aligned (%)

91.3

Duplicates removed (%)

49.5

Number of peaks

695 (qval < 1E-05)