SRX237293
GSM1082937: Pol2 siINO80 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells transfected with INO80 siRNA
cell type
HeLa-S3 cells
chip antibody
RNA polymerase II (Abcam, ab5408, lot GR258-5)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
139843914
Reads aligned (%)
98.0
Duplicates removed (%)
79.0
Number of peaks
2679 (qval < 1E-05)

hg19

Number of total reads
139843914
Reads aligned (%)
97.1
Duplicates removed (%)
80.8
Number of peaks
2244 (qval < 1E-05)

Base call quality data from DBCLS SRA