Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Neural

Cell type

Pons

MeSH Description

The front part of the hindbrain (RHOMBENCEPHALON) that lies between the MEDULLA and the midbrain (MESENCEPHALON) ventral to the cerebellum. It is composed of two parts, the dorsal and the ventral. The pons serves as a relay station for neural pathways between the CEREBELLUM to the CEREBRUM.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO317XRR

age

78 year

lab

John Stamatoyannopoulos, UW

tissue

pons

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

338140699

Reads aligned (%)

9.9

Duplicates removed (%)

19.6

Number of peaks

31197 (qval < 1E-05)

hg19

Number of total reads

338140699

Reads aligned (%)

9.8

Duplicates removed (%)

20.4

Number of peaks

30837 (qval < 1E-05)