Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Urinary Bladder

MeSH Description

A musculomembranous sac along the URINARY TRACT. URINE flows from the KIDNEYS into the bladder via the ureters (URETER), and is held there until URINATION.

Sample

dev stage

fetal

sex

male

sample type

tissue

donor ID

ENCDO647EYG

age

76 day

lab

John Stamatoyannopoulos, UW

tissue

urinary bladder

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

46055994

Reads aligned (%)

87.1

Duplicates removed (%)

13.1

Number of peaks

29216 (qval < 1E-05)

hg19

Number of total reads

46055994

Reads aligned (%)

86.5

Duplicates removed (%)

13.6

Number of peaks

28928 (qval < 1E-05)