Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Adipocyte

Cell type

Colon, Transverse

MeSH Description

The segment of LARGE INTESTINE between ASCENDING COLON and DESCENDING COLON. It passes from the RIGHT COLIC FLEXURE across the ABDOMEN, then turns sharply at the left colonic flexure into the descending colon.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO451RUA

age

54 year

lab

John Stamatoyannopoulos, UW

tissue

transverse colon

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

222756067

Reads aligned (%)

73.4

Duplicates removed (%)

17.0

Number of peaks

74286 (qval < 1E-05)

hg19

Number of total reads

222756067

Reads aligned (%)

72.9

Duplicates removed (%)

17.3

Number of peaks

73992 (qval < 1E-05)