Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Neural

Cell type

Globus Pallidus

MeSH Description

The representation of the phylogenetically oldest part of the corpus striatum called the paleostriatum. It forms the smaller, more medial part of the lentiform nucleus.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO317XRR

age

78 year

lab

John Stamatoyannopoulos, UW

tissue

globus pallidus

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

248731228

Reads aligned (%)

20.4

Duplicates removed (%)

27.5

Number of peaks

56815 (qval < 1E-05)

hg19

Number of total reads

248731228

Reads aligned (%)

20.3

Duplicates removed (%)

28.2

Number of peaks

56569 (qval < 1E-05)