SRX2370732
GSM2400431: DNase-seq from ELF-1 (ENCLB083SLH); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

dev stage
unknown
cell type
ELF-1
sex
female
sample type
stem cell
donor ID
ENCDO524DZC
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
237706432
Reads aligned (%)
2.5
Duplicates removed (%)
19.1
Number of peaks
23335 (qval < 1E-05)

hg19

Number of total reads
237706432
Reads aligned (%)
2.5
Duplicates removed (%)
20.2
Number of peaks
23398 (qval < 1E-05)

Base call quality data from DBCLS SRA