SRX2370730
GSM2400426: DNase-seq from heart (ENCLB417ZPE); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
Fetal heart
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
female
sample type
tissue
donor ID
ENCDO237NAG
age
76 day
lab
John Stamatoyannopoulos, UW
tissue
heart

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
252379691
Reads aligned (%)
80.2
Duplicates removed (%)
31.1
Number of peaks
107807 (qval < 1E-05)

hg19

Number of total reads
252379691
Reads aligned (%)
79.8
Duplicates removed (%)
31.7
Number of peaks
106929 (qval < 1E-05)

Base call quality data from DBCLS SRA