SRX2370705
GSM2400401: DNase-seq from esophagus squamous epithelium (ENCLB660ZZS); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Esophagus squamous epithelium
NA
NA

Attributes by original data submitter

Sample

dev stage
adult
sex
female
sample type
tissue
donor ID
ENCDO793LXB
age
53 year
lab
John Stamatoyannopoulos, UW
tissue
esophagus squamous epithelium

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
393244876
Reads aligned (%)
51.5
Duplicates removed (%)
58.5
Number of peaks
7904 (qval < 1E-05)

hg19

Number of total reads
393244876
Reads aligned (%)
51.1
Duplicates removed (%)
59.1
Number of peaks
6958 (qval < 1E-05)

Base call quality data from DBCLS SRA