SRX2370692
GSM2400390: DNase-seq from EH (ENCLB721PER); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

dev stage
newborn
cell line
EH
sex
male
sample type
immortalized cell line
donor ID
ENCDO000AAG
age
unknown
health state
normal
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
468031559
Reads aligned (%)
87.1
Duplicates removed (%)
35.3
Number of peaks
238386 (qval < 1E-05)

hg19

Number of total reads
468031559
Reads aligned (%)
86.8
Duplicates removed (%)
35.9
Number of peaks
236246 (qval < 1E-05)

Base call quality data from DBCLS SRA