Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Placenta

Cell type

Umbilical Cord

MeSH Description

The flexible rope-like structure that connects a developing FETUS to the PLACENTA in mammals. The cord contains blood vessels which carry oxygen and nutrients from the mother to the fetus and waste products away from the fetus.

Sample

dev stage

fetal

sex

male

sample type

tissue

donor ID

ENCDO647EYG

age

76 day

lab

John Stamatoyannopoulos, UW

tissue

umbilical cord

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

243323785

Reads aligned (%)

81.7

Duplicates removed (%)

21.8

Number of peaks

157241 (qval < 1E-05)

hg19

Number of total reads

243323785

Reads aligned (%)

81.2

Duplicates removed (%)

22.5

Number of peaks

156625 (qval < 1E-05)