Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Adipocyte

Cell type

Adipocytes

MeSH Description

Cells in the body that store FATS, usually in the form of TRIGLYCERIDES. WHITE ADIPOCYTES are the predominant type and found mostly in the abdominal cavity and subcutaneous tissue. BROWN ADIPOCYTES are thermogenic cells that can be found in newborns of some species and hibernating mammals.

Sample

dev stage

unknown

cell type

adipocyte

sex

not collected

sample type

in vitro differentiated cells

donor ID

ENCDO029QEV

age

unknown

lab

John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf general protocol: https://www.encodeproject.org/documents/296324f9-2501-42cf-909f-24cf69cd8609/@@download/attachment/General_SlowThawing_of_cells_SOP_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

32675018

Reads aligned (%)

90.6

Duplicates removed (%)

4.5

Number of peaks

65278 (qval < 1E-05)

hg19

Number of total reads

32675018

Reads aligned (%)

90.1

Duplicates removed (%)

4.8

Number of peaks

65071 (qval < 1E-05)