SRX2370663
GSM2400362: DNase-seq from MEL cell line (ENCLB992MJM); Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

dev stage
unknown
cell line
MEL cell line
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO073AAA
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
300040046
Reads aligned (%)
80.6
Duplicates removed (%)
9.9
Number of peaks
118427 (qval < 1E-05)

mm9

Number of total reads
300040046
Reads aligned (%)
80.4
Duplicates removed (%)
10.1
Number of peaks
118434 (qval < 1E-05)

Base call quality data from DBCLS SRA