Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Embryonic facial prominences
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
not collected
sample type
tissue
donor ID
ENCDO870GPO
age
53 day
lab
John Stamatoyannopoulos, UW
tissue
embryonic facial prominence

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
257462950
Reads aligned (%)
48.1
Duplicates removed (%)
54.8
Number of peaks
16616 (qval < 1E-05)

hg19

Number of total reads
257462950
Reads aligned (%)
47.8
Duplicates removed (%)
55.3
Number of peaks
16428 (qval < 1E-05)

Base call quality data from DBCLS SRA