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For mm10
BigWig
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For mm9
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: MEL
ATCC
MeSH
RIKEN BRC
SRX2370650
GSM2400331: DNase-seq from MEL cell line (ENCLB933EUN); Mus musculus; DNase-Hypersensitivity
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)
Attributes by original data submitter
Sample
dev stage
unknown
cell line
MEL cell line
treatments
treatment_term_id: CHEBI:49976; treatment_term_name: zinc dichloride; treatment_type: chemical; duration: 24; duration_units: hour;
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO073AAA
age
unknown
lab
John Stamatoyannopoulos, UW
Sequenced DNA Library
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
167318040
Reads aligned (%)
88.1
Duplicates removed (%)
10.9
Number of peaks
144915 (qval < 1E-05)
mm9
Number of total reads
167318040
Reads aligned (%)
88.0
Duplicates removed (%)
11.3
Number of peaks
144756 (qval < 1E-05)
Base call quality data from
DBCLS SRA