SRX2370633
GSM2400317: DNase-seq from middle frontal gyrus (ENCLB524IQB); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
Gyrus
NA
NA

Attributes by original data submitter

Sample

dev stage
adult
sex
male
sample type
tissue
donor ID
ENCDO317XRR
age
78 year
lab
John Stamatoyannopoulos, UW
tissue
middle frontal gyrus

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
175355107
Reads aligned (%)
69.8
Duplicates removed (%)
48.3
Number of peaks
27921 (qval < 1E-05)

hg19

Number of total reads
175355107
Reads aligned (%)
69.3
Duplicates removed (%)
48.9
Number of peaks
27765 (qval < 1E-05)

Base call quality data from DBCLS SRA