Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

dev stage

adult

sex

female

sample type

tissue

donor ID

ENCDO793LXB

age

53 year

lab

John Stamatoyannopoulos, UW

tissue

right lobe of liver

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

204818261

Reads aligned (%)

75.9

Duplicates removed (%)

18.9

Number of peaks

40029 (qval < 1E-05)

hg19

Number of total reads

204818261

Reads aligned (%)

75.3

Duplicates removed (%)

19.3

Number of peaks

37823 (qval < 1E-05)