SRX2368253
GSM2400529: ChIP-seq STJ0537 H3K27ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
STJ0537
tissue id
STJ0537
tissue source/type
primary kidney rhabdoid tumor tissue
chip antibody
H3K27ac (Active Motif 39133)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysis (SDS) of sonicated (Branson) nuclei, ChIP with antibodies and Dynabeads single read Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22056194
Reads aligned (%)
98.4
Duplicates removed (%)
5.3
Number of peaks
11924 (qval < 1E-05)

hg19

Number of total reads
22056194
Reads aligned (%)
97.7
Duplicates removed (%)
6.2
Number of peaks
11844 (qval < 1E-05)

Base call quality data from DBCLS SRA