SRX236483
GSM1082347: ChIP-Seq for Cdk9 in mES cells; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cdk9

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
chip antibody
Cdk9
antibody vendor and catalog number
Santa Cruz SC-8338,SC-484
background strain
C57BL/6-129

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28328191
Reads aligned (%)
81.2
Duplicates removed (%)
17.7
Number of peaks
10339 (qval < 1E-05)

mm9

Number of total reads
28328191
Reads aligned (%)
81.1
Duplicates removed (%)
17.8
Number of peaks
10256 (qval < 1E-05)

Base call quality data from DBCLS SRA