SRX2353177
GSM2393578: Wound ATACseq; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Skin epithelia
NA
NA

Attributes by original data submitter

Sample

source_name
Skin
gender
female
strain
CD1/B6 mixed
cell types
wounded stem cells from adult skin epithelia
sort markers
Integrin A6Pos, Sca1Pos

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC protocol from Buenrostro et al 2013 Nat Method ATAC protocol from Buenrostro et al 2013 Nat Method Pair-end Read Clustering and 51 Cycles Sequencing (per lane)

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
57811861
Reads aligned (%)
81.4
Duplicates removed (%)
22.7
Number of peaks
95571 (qval < 1E-05)

mm9

Number of total reads
57811861
Reads aligned (%)
81.3
Duplicates removed (%)
22.8
Number of peaks
95536 (qval < 1E-05)

Base call quality data from DBCLS SRA