SRX235033
GSM1080934: H3K9ac ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Blood
Cell type
NALM-6
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Nalm6 ALL leukemia cells
cell type
pre-B ALL leukemia cells
culture condition
10% FBS RPMI1640 in 5% CO2, 37°C
antibody vendor/catalog
Abcam, ab4441
ChIP
H3K9ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25547326
Reads aligned (%)
97.1
Duplicates removed (%)
7.3
Number of peaks
787 (qval < 1E-05)

hg19

Number of total reads
25547326
Reads aligned (%)
96.4
Duplicates removed (%)
8.2
Number of peaks
1050 (qval < 1E-05)

Base call quality data from DBCLS SRA