Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

Liver

tissue

liver

circadian clock

ZT02

genotype

Arntl KO

strain

C57BL/6

age

12-14 weeks

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChiP-seq was performed as described (Bonhoure et al., 2014) Libraries were prepared with 12 ng of ChIP DNA (ChIP-seq) or genomic DNA (INPUT) according to manufacturer's's instruction with the ChIP-seq DNA Sample prep kit” (Illumina, 1003473)

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

153759373

Reads aligned (%)

96.1

Duplicates removed (%)

44.4

Number of peaks

1230 (qval < 1E-05)

mm9

Number of total reads

153759373

Reads aligned (%)

96.0

Duplicates removed (%)

44.5

Number of peaks

1331 (qval < 1E-05)