SRX2342019
VA-ES-BJ empty anti-H3K27me3 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
VA-ES-BJ
Primary Tissue
Bone
Tissue Diagnosis
Sarcoma

Attributes by original data submitter

Sample

isolate
Epithelioid Sarcoma cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Epithelioid Sarcoma
cell_line
VA-ES-BJ
treatment
empty anti-H3K27me3 ChIP-seq

Sequenced DNA Library

library_name
VA-ES-BJ_empty_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25822809
Reads aligned (%)
88.5
Duplicates removed (%)
5.4
Number of peaks
197 (qval < 1E-05)

hg19

Number of total reads
25822809
Reads aligned (%)
88.2
Duplicates removed (%)
5.9
Number of peaks
214 (qval < 1E-05)

Base call quality data from DBCLS SRA