SRX2342008
G401 empty anti-H3K27me3 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
G-401
Primary Tissue
Kidney
Tissue Diagnosis
Wilms' tumor

Attributes by original data submitter

Sample

isolate
Malignant Rhabdoid Tumors cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Malignant rhabdoid tumor
cell_line
G401
treatment
empty anti-H3K27me3 ChIP-seq

Sequenced DNA Library

library_name
G401_empty_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
61684797
Reads aligned (%)
90.8
Duplicates removed (%)
6.6
Number of peaks
589 (qval < 1E-05)

hg19

Number of total reads
61684797
Reads aligned (%)
90.5
Duplicates removed (%)
7.2
Number of peaks
594 (qval < 1E-05)

Base call quality data from DBCLS SRA