SRX2341995
VA-ES-BJ empty anti-H3K27ac ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
VA-ES-BJ
Primary Tissue
Bone
Tissue Diagnosis
Sarcoma

Attributes by original data submitter

Sample

isolate
Epithelioid Sarcoma cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Epithelioid Sarcoma
cell_line
VA-ES-BJ
treatment
empty anti-H3K27ac ChIP-seq

Sequenced DNA Library

library_name
VA-ES-BJ_empty_H3K27ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
61707560
Reads aligned (%)
90.7
Duplicates removed (%)
12.4
Number of peaks
27576 (qval < 1E-05)

hg19

Number of total reads
61707560
Reads aligned (%)
90.4
Duplicates removed (%)
12.9
Number of peaks
27370 (qval < 1E-05)

Base call quality data from DBCLS SRA