SRX2341994
VA-ES-BJ BAF47 anti-BRG1 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
VA-ES-BJ
Primary Tissue
Bone
Tissue Diagnosis
Sarcoma

Attributes by original data submitter

Sample

isolate
Epithelioid Sarcoma cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Epithelioid Sarcoma
cell_line
VA-ES-BJ
treatment
BAF47 anti-BRG1 ChIP-seq

Sequenced DNA Library

library_name
VA-ES-BJ_BAF47_BRG1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49346636
Reads aligned (%)
97.3
Duplicates removed (%)
26.9
Number of peaks
37676 (qval < 1E-05)

hg19

Number of total reads
49346636
Reads aligned (%)
96.8
Duplicates removed (%)
27.8
Number of peaks
37354 (qval < 1E-05)

Base call quality data from DBCLS SRA