SRX2341989
VA-ES-BJ empty anti-BAF155 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Bone
Cell type
VA-ES-BJ
Primary Tissue
Bone
Tissue Diagnosis
Sarcoma

Attributes by original data submitter

Sample

isolate
Epithelioid Sarcoma cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Epithelioid Sarcoma
cell_line
VA-ES-BJ
treatment
empty anti-BAF155 ChIP-seq

Sequenced DNA Library

library_name
VA-ES-BJ_empty_BAF155
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
55405879
Reads aligned (%)
97.3
Duplicates removed (%)
35.5
Number of peaks
18175 (qval < 1E-05)

hg19

Number of total reads
55405879
Reads aligned (%)
96.5
Duplicates removed (%)
37.0
Number of peaks
17832 (qval < 1E-05)

Base call quality data from DBCLS SRA