SRX2341987
TTC1240 empty anti-H3K27ac ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
TTC1240
NA
NA

Attributes by original data submitter

Sample

isolate
Malignant Rhabdoid Tumors cell line
age
NA
biomaterial_provider
ATCC
sex
female
tissue
Malignant rhabdoid tumor
cell_line
TTC1240
treatment
empty anti-H3K27ac ChIP-seq

Sequenced DNA Library

library_name
TTC1240_empty_H3K27ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
60394774
Reads aligned (%)
91.4
Duplicates removed (%)
8.6
Number of peaks
16823 (qval < 1E-05)

hg19

Number of total reads
60394774
Reads aligned (%)
91.2
Duplicates removed (%)
9.0
Number of peaks
16887 (qval < 1E-05)

Base call quality data from DBCLS SRA