SRX2341982
HS-ES-2M BAF47 anti-H3K27ac ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
HS-ES-2M
Primary Tissue
Unknown
Tissue Diagnosis
Sarcoma

Attributes by original data submitter

Sample

isolate
Epithelioid Sarcoma cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Epithelioid Sarcoma
cell_line
HS-ES-2M
treatment
BAF47 anti-H3K27ac ChIP-seq

Sequenced DNA Library

library_name
HS-ES-2M_BAF47_H3K27ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
60324225
Reads aligned (%)
90.9
Duplicates removed (%)
12.7
Number of peaks
35353 (qval < 1E-05)

hg19

Number of total reads
60324225
Reads aligned (%)
90.7
Duplicates removed (%)
12.8
Number of peaks
35373 (qval < 1E-05)

Base call quality data from DBCLS SRA