SRX2341976
G401 BAF47 Input ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
G-401
Primary Tissue
Kidney
Tissue Diagnosis
Wilms' tumor

Attributes by original data submitter

Sample

isolate
Malignant Rhabdoid Tumors cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Malignant rhabdoid tumor
cell_line
G401
treatment
BAF47 Input ChIP-seq

Sequenced DNA Library

library_name
G401_BAF47_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
83036562
Reads aligned (%)
97.0
Duplicates removed (%)
14.9
Number of peaks
1615 (qval < 1E-05)

hg19

Number of total reads
83036562
Reads aligned (%)
96.1
Duplicates removed (%)
16.1
Number of peaks
1323 (qval < 1E-05)

Base call quality data from DBCLS SRA