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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: G-401
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2341967
G401 BAF47 anti-BAF155 ChIP-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Kidney
Cell type
G-401
Primary Tissue
Kidney
Tissue Diagnosis
Wilms' tumor
Attributes by original data submitter
Sample
isolate
Malignant Rhabdoid Tumors cell line
age
NA
biomaterial_provider
ATCC
sex
male
tissue
Malignant rhabdoid tumor
cell_line
G401
treatment
BAF47 anti-BAF155 ChIP-seq
Sequenced DNA Library
library_name
G401_BAF47_BAF155
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
44415918
Reads aligned (%)
96.8
Duplicates removed (%)
20.3
Number of peaks
20104 (qval < 1E-05)
hg19
Number of total reads
44415918
Reads aligned (%)
96.1
Duplicates removed (%)
21.2
Number of peaks
19810 (qval < 1E-05)
Base call quality data from
DBCLS SRA