SRX233463
GSM1081381: TFAP2A MCF; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2A

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7
cell line
breast carcinoma cell line MCF-7
antibody
AP-2α Antibody (3B5) [Santa Cruz, catalog# sc-12726]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10465894
Reads aligned (%)
93.6
Duplicates removed (%)
11.2
Number of peaks
13670 (qval < 1E-05)

hg19

Number of total reads
10465894
Reads aligned (%)
92.8
Duplicates removed (%)
11.3
Number of peaks
13691 (qval < 1E-05)

Base call quality data from DBCLS SRA