Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Cell line_PolII_ChIP_no treatment
cell line
V6.5
antibody
Anti-Pol II antibody, sc-56767
cell type
ESC-derived NPCs
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% formaldehyde. Cell lysates were obtained from sonicated nuclei and protein-DNA complexes were isolated with indicated antibodies. Libraries were prepared with KAPA LTP kit according to manufacturer's protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
14338469
Reads aligned (%)
79.6
Duplicates removed (%)
12.7
Number of peaks
3252 (qval < 1E-05)

mm9

Number of total reads
14338469
Reads aligned (%)
79.4
Duplicates removed (%)
12.9
Number of peaks
3230 (qval < 1E-05)

Base call quality data from DBCLS SRA