Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Gonad
Cell type
Spermatocytes
MeSH Description
Male germ cells derived from SPERMATOGONIA. The euploid primary spermatocytes undergo MEIOSIS and give rise to the haploid secondary spermatocytes which in turn give rise to SPERMATIDS.

Attributes by original data submitter

Sample

source_name
Pachyten spermatocytes
strain
C57BL/6
tissue
testis
age
adult
genotype
Scml2-KO
biowardrobe ides
3379

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided by the submitter none provided by the submitter

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
68597579
Reads aligned (%)
87.3
Duplicates removed (%)
16.6
Number of peaks
570 (qval < 1E-05)

mm9

Number of total reads
68597579
Reads aligned (%)
87.2
Duplicates removed (%)
16.6
Number of peaks
534 (qval < 1E-05)

Base call quality data from DBCLS SRA