Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Naive B cells
NA
NA

Attributes by original data submitter

Sample

source_name
naïve B cell (B220+ Fas- GL7-), Dnmt3-deficient
background/strain
B6;129S4-Dnmt3atm3.1Enl Dnmt3btm5.1Enl/Mmnc
genotype/variation
Cd19cre/wtDnmt3afl/flDnmt3bfl/fl
gender
male
tissue
lymph node
cell type
naive B cell (B220+ Fas- GL7-)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
18614934
Reads aligned (%)
80.1
Duplicates removed (%)
25.4
Number of peaks
27899 (qval < 1E-05)

mm9

Number of total reads
18614934
Reads aligned (%)
80.0
Duplicates removed (%)
25.6
Number of peaks
27871 (qval < 1E-05)

Base call quality data from DBCLS SRA