SRX2321776
GSM2372594: ChiP2 Sc.fastq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells (hESCs)
antibody
NKX2-5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified using a PCR purification kit (QIAGEN) illumina ChIP Seq protocol

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27272116
Reads aligned (%)
98.2
Duplicates removed (%)
16.6
Number of peaks
5143 (qval < 1E-05)

hg19

Number of total reads
27272116
Reads aligned (%)
97.2
Duplicates removed (%)
18.3
Number of peaks
4898 (qval < 1E-05)

Base call quality data from DBCLS SRA