Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Wild-type MEFs immortalized with SV40 large T antigen and treated with MG132.
cell type
Mouse enbryonic fibroblasts

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei, and protein-DNA complexes were isolated using antibody to Nrf1 and Dynabeads-proteinA and -proteinG Libraries were prepared according to NuGEN's instructions accompanying the Ovation Ultralow DR Multiplex System 1-8 (NuGEN, 0330-32).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
82587118
Reads aligned (%)
94.8
Duplicates removed (%)
15.9
Number of peaks
292 (qval < 1E-05)

mm9

Number of total reads
82587118
Reads aligned (%)
94.6
Duplicates removed (%)
16.5
Number of peaks
287 (qval < 1E-05)

Base call quality data from DBCLS SRA