SRX228674
GSM1079815: H3K4me3 DicerWT R1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1079815
cell type
murine MSC cell line
genotype
Dicer f/f
strain
C57BL/6
chip antibody
H3K4me3: Millipore 07-473, lot # DAM1731494 (7.5uL per ChIP)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17520736
Reads aligned (%)
96.8
Duplicates removed (%)
66.8
Number of peaks
17691 (qval < 1E-05)

mm9

Number of total reads
17520736
Reads aligned (%)
96.5
Duplicates removed (%)
67.0
Number of peaks
17745 (qval < 1E-05)

Base call quality data from DBCLS SRA