SRX228664
GSM1079805: H3K27me3 DicerKO R1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1079805
cell type
murine MSC cell line
genotype
Dicer -/-
strain
C57BL/6
chip antibody
H3K27me3: Abcam ab6002-100, lot # 49749

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31209610
Reads aligned (%)
95.7
Duplicates removed (%)
28.8
Number of peaks
316 (qval < 1E-05)

mm9

Number of total reads
31209610
Reads aligned (%)
95.5
Duplicates removed (%)
28.9
Number of peaks
380 (qval < 1E-05)

Base call quality data from DBCLS SRA