Antigen

Antigen Class

Bisulfite-Seq

Antigen

Bisulfite-Seq

Cell type

Cell type Class

Liver

Cell type

Hepatocytes

MeSH Description

The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Sample

source_name

Hepatocytes

strain

Ames Dwarf

genotype

Prop1 Het

Sequenced DNA Library

library_strategy

Bisulfite-Seq

library_source

GENOMIC

library_selection

RANDOM

library_construction_protocol

DNA was extracted by Dneasy blood and tissue kit (Quiagen) Libraries were prepared by BGI, Shenzhen. Briefly, DNA is fragmented and methylated adapters are ligated to DNA fragments. DNA is bisulphite treated and sequenced on Illumina platforms as per manufacturers instructions.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

mm10

Number of total reads

204987952

Reads aligned (%)

86.8

Coverage rate (×)

5.2

Number of hyper MRs

326418 (qval < 1E-05)

mm9

Number of total reads

204987952

Reads aligned (%)

88.4

Coverage rate (×)

5.2

Number of hyper MRs

325664 (qval < 1E-05)