Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF5

Cell type

Cell type Class
Others
Cell type
BICR 31
Primary Tissue
Tongue
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
Cancer cell line
tumor type
Head and neck squamous cell carcinomas
cell line
BICR31
antibody
KLF5, Abcam, ab137676
treatment
NA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
20062009
Reads aligned (%)
98.2
Duplicates removed (%)
15.4
Number of peaks
10759 (qval < 1E-05)

hg19

Number of total reads
20062009
Reads aligned (%)
97.6
Duplicates removed (%)
16.0
Number of peaks
10841 (qval < 1E-05)

Base call quality data from DBCLS SRA