Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF5

Cell type

Cell type Class
Others
Cell type
BICR 31
Primary Tissue
Tongue
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
Cancer cell line
tumor type
Head and neck squamous cell carcinomas
cell line
BICR31
antibody
KLF5, Abcam, ab137676
treatment
NA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)

Sequencing Platform

instrument_model
Illumina MiSeq

hg19

Number of total reads
20062009
Reads aligned (%)
82.0
Duplicates removed (%)
16.0
Number of peaks
10841 (qval < 1E-05)

hg38

Number of total reads
20062009
Reads aligned (%)
83.0
Duplicates removed (%)
15.4
Number of peaks
10759 (qval < 1E-05)

Base call quality data from DBCLS SRA