Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
Prostate cells
cell line
C4-2
treatment
JQ1
chip antibody
BRD4 (BETHYL,A301-985A100)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were extracted as as described previously (PMID: 27068475). Libraries were prepared according to Illumina's instructions accompanying the ChIP-seq Sample Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
11636379
Reads aligned (%)
173.1
Duplicates removed (%)
4.7
Number of peaks
410 (qval < 1E-05)

hg38

Number of total reads
11636379
Reads aligned (%)
175.6
Duplicates removed (%)
4.4
Number of peaks
565 (qval < 1E-05)

Base call quality data from DBCLS SRA