Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic skeletal muscles
NA
NA

Attributes by original data submitter

Sample

source_name
Skeletal Muscle in Embryo
sample type
Primary tissue
background strain
mixed background of C57BL/6 and 129S1
tissue
Skeletal Muscle in Embryo
age
E13.5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were isolated by homogenization in hypotonic buffer and then resuspended in ChIP buffer for sonication. Sonication conditions were titrated to achieve sufficient fragmentation (mean fragment size 500 bp) while avoiding degradation of p300 protein. ChIP-seq libraries were prepared with KAPA Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
26077737
Reads aligned (%)
93.8
Duplicates removed (%)
10.1
Number of peaks
7463 (qval < 1E-05)

mm9

Number of total reads
26077737
Reads aligned (%)
93.7
Duplicates removed (%)
10.2
Number of peaks
7415 (qval < 1E-05)

Base call quality data from DBCLS SRA